How to Perform Simple Linear Regression in Python (Step-by-Step)


Simple linear regression is a technique that we can use to understand the relationship between a single explanatory variable and a single response variable.

This technique finds a line that best “fits” the data and takes on the following form:

ŷ = b0 + b1x

where:

  • ŷ: The estimated response value
  • b0: The intercept of the regression line
  • b1: The slope of the regression line

This equation can help us understand the relationship between the explanatory and response variable, and (assuming it’s statistically significant) it can be used to predict the value of a response variable given the value of the explanatory variable.

This tutorial provides a step-by-step explanation of how to perform simple linear regression in Python.

Step 1: Load the Data

For this example, we’ll create a fake dataset that contains the following two variables for 15 students:

  • Total hours studied for some exam
  • Exam score

We’ll attempt to fit a simple linear regression model using hours as the explanatory variable and exam score as the response variable.

The following code shows how to create this fake dataset in Python:

import pandas as pd

#create dataset
df = pd.DataFrame({'hours': [1, 2, 4, 5, 5, 6, 6, 7, 8, 10, 11, 11, 12, 12, 14],
                   'score': [64, 66, 76, 73, 74, 81, 83, 82, 80, 88, 84, 82, 91, 93, 89]})
      

#view first six rows of dataset
df[0:6]

    hours    score
0	1	64
1	2	66
2	4	76
3	5	73
4	5	74
5	6	81

Step 2: Visualize the Data

Before we fit a simple linear regression model, we should first visualize the data to gain an understanding of it.

First, we want to make sure that the relationship between hours and score is roughly linear, since that is an underlying assumption of simple linear regression.

We can create a simple scatterplot to view the relationship between the two variables:

import matplotlib.pyplot as plt

plt.scatter(df.hours, df.score)
plt.title('Hours studied vs. Exam Score')
plt.xlabel('Hours')
plt.ylabel('Score')
plt.show()

Scatterplot in Python

From the plot we can see that the relationship does appear to be linear. As hours increases, score tends to increase as well in a linear fashion.

Next, we can create a boxplot to visualize the distribution of exam scores and check for outliers. By default, Python defines an observation to be an outlier if it is 1.5 times the interquartile range greater than the third quartile (Q3) or 1.5 times the interquartile range less than the first quartile (Q1).

If an observation is an outlier, a tiny circle will appear in the boxplot:

df.boxplot(column=['score'])

Boxplot in Python

There are no tiny circles in the boxplot, which means there are no outliers in our dataset.

Step 3: Perform Simple Linear Regression

Once we’ve confirmed that the relationship between our variables is linear and that there are no outliers present, we can proceed to fit a simple linear regression model using hours as the explanatory variable and score as the response variable:

Note: We’ll use the OLS() function from the statsmodels library to fit the regression model.

import statsmodels.api as sm

#define response variable
y = df['score']

#define explanatory variable
x = df[['hours']]

#add constant to predictor variables
x = sm.add_constant(x)

#fit linear regression model
model = sm.OLS(y, x).fit()

#view model summary
print(model.summary())

                            OLS Regression Results                            
==============================================================================
Dep. Variable:                  score   R-squared:                       0.831
Model:                            OLS   Adj. R-squared:                  0.818
Method:                 Least Squares   F-statistic:                     63.91
Date:                Mon, 26 Oct 2020   Prob (F-statistic):           2.25e-06
Time:                        15:51:45   Log-Likelihood:                -39.594
No. Observations:                  15   AIC:                             83.19
Df Residuals:                      13   BIC:                             84.60
Df Model:                           1                                         
Covariance Type:            nonrobust                                         
==============================================================================
                 coef    std err          t      P>|t|      [0.025      0.975]
------------------------------------------------------------------------------
const         65.3340      2.106     31.023      0.000      60.784      69.884
hours          1.9824      0.248      7.995      0.000       1.447       2.518
==============================================================================
Omnibus:                        4.351   Durbin-Watson:                   1.677
Prob(Omnibus):                  0.114   Jarque-Bera (JB):                1.329
Skew:                           0.092   Prob(JB):                        0.515
Kurtosis:                       1.554   Cond. No.                         19.2
==============================================================================

From the model summary we can see that the fitted regression equation is:

Score = 65.334 + 1.9824*(hours)

This means that each additional hour studied is associated with an average increase in exam score of 1.9824 points. And the intercept value of 65.334 tells us the average expected exam score for a student who studies zero hours.

We can also use this equation to find the expected exam score based on the number of hours that a student studies. For example, a student who studies for 10 hours is expected to receive an exam score of 85.158:

Score = 65.334 + 1.9824*(10) = 85.158

Here is how to interpret the rest of the model summary:

  • P>|t|: This is the p-value associated with the model coefficients. Since the p-value for hours (0.000) is significantly less than .05, we can say that there is a statistically significant association between hours and score.
  • R-squared: This number tells us the percentage of the variation in the exam scores can be explained by the number of hours studied. In general, the larger the R-squared value of a regression model the better the explanatory variables are able to predict the value of the response variable. In this case, 83.1% of the variation in scores can be explained hours studied.
  • F-statistic & p-value: The F-statistic (63.91) and the corresponding p-value (2.25e-06) tell us the overall significance of the regression model, i.e. whether explanatory variables in the model are useful for explaining the variation in the response variable. Since the p-value in this example is less than .05, our model is statistically significant and hours is deemed to be useful for explaining the variation in score.

Step 4: Create Residual Plots

After we’ve fit the simple linear regression model to the data, the last step is to create residual plots.

One of the key assumptions of linear regression is that the residuals of a regression model are roughly normally distributed and are homoscedastic at each level of the explanatory variable. If these assumptions are violated, then the results of our regression model could be misleading or unreliable.

To verify that these assumptions are met, we can create the following residual plots:

Residual vs. fitted values plot: This plot is useful for confirming homoscedasticity. The x-axis displays the fitted values and the y-axis displays the residuals. As long as the residuals appear to be randomly and evenly distributed throughout the chart around the value zero, we can assume that homoscedasticity is not violated:

#define figure size
fig = plt.figure(figsize=(12,8))

#produce residual plots
fig = sm.graphics.plot_regress_exog(model, 'hours', fig=fig)

Residual plots in Python

Four plots are produced. The one in the top right corner is the residual vs. fitted plot. The x-axis on this plot shows the actual values for the predictor variable points and the y-axis shows the residual for that value.

Since the residuals appear to be randomly scattered around zero, this is an indication that heteroscedasticity is not a problem with the explanatory variable.

Q-Q plot: This plot is useful for determining if the residuals follow a normal distribution. If the data values in the plot fall along a roughly straight line at a 45-degree angle, then the data is normally distributed:

#define residuals
res = model.resid

#create Q-Q plot
fig = sm.qqplot(res, fit=True, line="45")
plt.show() 

Q-Q plot in Python

The residuals stray from the 45-degree line a bit, but not enough to cause serious concern. We can assume that the normality assumption is met.

Since the residuals are normally distributed and homoscedastic, we’ve verified that the assumptions of the simple linear regression model are met. Thus, the output from our model is reliable.

The complete Python code used in this tutorial can be found here.

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